Applications

Google Antigravity is a next-generation IDE that uses autonomous AI agents to manage complex software development tasks

JupyterLab is a web-based user interface for Project Jupyter. It is an extensible environment for interactive and reproducible computing, based on the Jupyter Notebook technology stack.

Cursor is an AI-native code editor built as a fork of Visual Studio Code that deeply integrates large language models into the development workflow, allowing programmers to generate entire files, refactor complex logic, and debug errors through a natural language interface that maintains a constant, context-aware understanding of their entire local codebase.

Visual Studio Code (VSCode) is a code editor redefined and optimized for building and debugging modern web and cloud applications.

RStudio is an integrated development environment for the R statistical programming language.

MATLAB is a proprietary multi-paradigm programming language and numeric computing environment developed by MathWorks.

Julia is a high-level, dynamic programming language designed for numerical and scientific computing, with a syntax that is easy to read and write, and performance comparable to low-level languages.

GNU Octave is a high-level programming language primarily intended for scientific computing and numerical computation. The Octave language is mostly compatible with MATLAB.

PyCharm is an integrated development environment used for programming in Python. It provides code analysis, a graphical debugger, an integrated unit tester, integration with version control systems, and supports web development with Django.

Spyder is an open-source cross-platform integrated development environment for scientific programming in the Python language.

Metabase is an open-source analytics tool that enables users to easily create, visualize, and share data insights without the need for extensive coding or technical expertise.

Apache Superset is an open-source software application for data exploration and data visualization able to handle data at petabyte scale.

Stata is a general-purpose statistical software package developed by StataCorp for data manipulation, visualization, statistics, and automated reporting. It is used by researchers in many fields, including biomedicine, epidemiology, sociology and science.

A pure terminal emulator application to interact with a bash shell.

MariaDB is a community-developed, commercially supported fork of the MySQL relational database management system (RDBMS).

A flexible data labeling tool for all data types. Prepare training data for computer vision, natural language processing, speech, voice, and video models.

AnythingLLM is an open-source, full-stack AI document chat and agent platform that enables users to upload documents, connect to websites, and interact with any large language model (LLM) provider through a clean, self-hosted web interface. It supports multi-user workspaces, embedded vector databases for private document retrieval, and a powerful agentic framework with tool calling, web browsing, and MCP server integration, making it a versatile solution for building private, organisation-specific AI assistants.

The Wolfram Engine, the brains behind Mathematica and Wolfram|Alpha, is a powerful computational engine that lets you use the Wolfram Language for complex calculations, data analysis, and knowledge exploration across various platforms.

SAS is a statistical software suite developed by SAS Institute for data management, advanced analytics, multivariate analysis, business intelligence, criminal investigation, and predictive analytics.

QuPath is open source software for bioimage analysis. Workflows for brightfield & fluorescence image analysis. New algorithms for common tasks, including cell segmentation, tissue microarray dearraying.

Azure Databricks is a fast, easy, and collaborative Apache Spark-based big data analytics service designed for data science and data engineering.

Plug-and-play apps that expose Hugging Face models as ready-to-use API endpoints, designed to slot into any AI pipeline as a self-contained inference service.

Open WebUI is an extensible, feature-rich, and user-friendly self-hosted AI platform designed to operate entirely offline. It supports various LLM runners like Ollama and OpenAI-compatible APIs, with built-in inference engine for RAG, making it a powerful AI deployment solution.

DBeaver is a SQL client software application and a database administration tool. For relational databases it uses the JDBC application programming interface to interact with databases via a JDBC driver. For other databases it uses proprietary database drivers.

Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming or systems administration experience.

QGIS is a free and open-source cross-platform desktop geographic information system application that supports viewing, editing, printing, and analysis of geospatial data.

OpenMetaData is an end-to-end metadata management platform that enables unlocking the value of data assets in common use cases of data discovery and governance, as well as emerging use cases related to data quality, observability, and people collaboration.

LM Studio is an open-source desktop application that enables users to discover, download, and run large language models (LLMs) locally on their own hardware — entirely offline and without requiring an internet connection during inference. It provides an intuitive chat interface, an OpenAI-compatible local server for API access, and a built-in model hub for browsing and downloading GGUF models from Hugging Face. Supporting a wide range of architectures including LLaMA, Mistral, Phi, Gemma, and Qwen, LM Studio is a powerful solution for researchers and developers who want full control, privacy, and reproducibility over their AI workflows.

CellRanger is a free, open-source software suite that performs analysis of single-cell RNA-seq data from the 10X Genomics Chromium platform.

Shiny is an R package that makes it easy to build interactive web apps straight from R. You can host standalone apps on a webpage or embed them in R Markdown documents or build dashboards.

MLflow is a platform to streamline machine learning development, including tracking experiments, packaging code into reproducible runs, and sharing and deploying models.

Apache Airflow is an open-source workflow management platform for data engineering pipelines.

IntelliJ IDEA is an integrated development environment written in Java for developing computer software written in Java, Kotlin, Groovy, and other JVM-based languages.

FlowJo is a comprehensive software platform designed for analyzing flow cytometry data, enabling researchers to visualize, quantify, and interpret complex biological experiments.

napari is a fast, interactive, multi-dimensional image viewer for Python. It's designed for browsing, annotating, and analyzing large multi-dimensional images. It's built on top of Qt (for the GUI), vispy (for performant GPU-based rendering), and the scientific Python stack (numpy, scipy).

LibreOffice is a free and open-source office productivity suite that includes a word processor, spreadsheet program, presentation software, drawing tools, and more. Calc is the spreadsheet editor of the LibreOffice family.

REDCap is a secure web platform for building and managing online databases and surveys.

GeoDa is a free and open-source software application that provides a user-friendly interface for exploratory spatial data analysis, geovisualization, and the modeling of spatial patterns.

VesselExpress is an open-source Python pipeline for automated 3D analysis of blood vasculature in light-sheet microscopy images.

Cn3D ("see in 3D") is an application that allows you to view 3-dimensional structures from NCBI's Entrez Structure database.

Mage is a 3D molecular visualization program which shows "kinemage" graphics.

KiNG (Kinemage, Next Generation) is an interactive system for three-dimensional vector graphics. It supports a set of graphics primitives that make it suitable for many types of graphs, plots, and other illustrations; although its first use was to display macromolecular structures for biophysical research.

MZmine is an open-source software program used to analyze complex data generated by mass spectrometry instruments.

MEGA (Molecular Evolutionary Genetics Analysis) is a software for conducting statistical analysis of molecular evolution and for constructing phylogenetic trees.

PyMOL is a user-sponsored molecular visualization system on an open-source foundation, maintained and distributed by Schrödinger

FragPipe is a Java Graphical User Interface (GUI) for a suite of computational tools enabling comprehensive analysis of mass spectrometry-based proteomics data.

Dynare is an open-source software platform for solving, simulating, and estimating dynamic stochastic general equilibrium (DSGE) models, commonly used in macroeconomics.

Mindmapping software visually organizes information through branching diagrams, facilitating brainstorming, planning, and knowledge retention.

Ollama is an open-source framework that allows you to run, manage, and customize large language models locally on your own hardware for maximum privacy and performance.

Tale is an open-source AI-native research and knowledge management platform that combines a web crawler, RAG (Retrieval-Augmented Generation), and an AI operator into a unified interface. Built on top of Convex for real-time sync and ParadeDB for hybrid full-text and vector search, Tale enables teams to collect, organize, and query knowledge from web sources using natural language. It integrates with any OpenAI-compatible LLM provider, supports Auth0 authentication, and stores all data locally for full privacy and control.